389 lines
14 KiB
Python
389 lines
14 KiB
Python
import uuid
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from datetime import date
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from typing import Literal
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from pydantic import BaseModel, Field
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from sqlalchemy import delete, or_, select
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from sqlalchemy.ext.asyncio import AsyncSession
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from app.models.milestone import Milestone
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from app.models.site import Site
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from app.models.study import Study
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from app.models.study_center_confirm import StudyCenterConfirm
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from app.models.study_monitoring_strategy import StudyMonitoringStrategy
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from app.models.user import User
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from app.schemas.study_setup_config import StudySetupConfigData
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PROJECT_MILESTONE_TYPE = "SETUP_PROJECT_MILESTONE"
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SITE_MILESTONE_TYPE = "SETUP_SITE_MILESTONE"
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MILESTONE_STATUS_MAP = {
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"未开始": "NOT_STARTED",
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"进行中": "IN_PROGRESS",
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"已完成": "DONE",
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"延期": "BLOCKED",
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}
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def _map_milestone_status(raw_status: str | None) -> str | None:
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normalized = (raw_status or "").strip()
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if not normalized:
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return "NOT_STARTED"
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return MILESTONE_STATUS_MAP.get(normalized)
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class SetupProjectionSkippedItem(BaseModel):
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site_id: str
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reason: str
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class SetupProjectionResult(BaseModel):
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status: Literal["success", "partial_success", "failed"]
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study_updated: bool = False
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site_updated_count: int = 0
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site_skipped_count: int = 0
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warnings: list[str] = Field(default_factory=list)
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skipped_items: list[SetupProjectionSkippedItem] = Field(default_factory=list)
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def _parse_date(value: str) -> date | None:
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if not value:
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return None
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try:
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return date.fromisoformat(value)
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except ValueError:
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return None
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def _normalize_text(value: str | None) -> str | None:
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if value is None:
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return None
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normalized = value.strip()
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return normalized or None
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async def _build_owner_lookup(
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db: AsyncSession,
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*,
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setup_data: StudySetupConfigData,
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result: SetupProjectionResult,
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) -> dict[str, uuid.UUID]:
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owners: set[str] = set()
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for row in setup_data.projectMilestones:
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owner = _normalize_text(row.owner)
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if owner:
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owners.add(owner)
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for row in setup_data.siteMilestones:
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owner = _normalize_text(row.owner)
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if owner:
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owners.add(owner)
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if not owners:
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return {}
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users_result = await db.execute(
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select(User.id, User.full_name, User.email).where(
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or_(User.full_name.in_(owners), User.email.in_(owners))
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)
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)
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rows = users_result.all()
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owner_candidates: dict[str, set[uuid.UUID]] = {}
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for user_id, full_name, email in rows:
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full_name_key = _normalize_text(full_name)
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email_key = _normalize_text(email)
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if full_name_key and full_name_key in owners:
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owner_candidates.setdefault(full_name_key, set()).add(user_id)
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if email_key and email_key in owners:
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owner_candidates.setdefault(email_key, set()).add(user_id)
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resolved: dict[str, uuid.UUID] = {}
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for owner in sorted(owners):
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candidates = owner_candidates.get(owner, set())
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if len(candidates) == 1:
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resolved[owner] = next(iter(candidates))
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elif len(candidates) > 1:
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result.warnings.append(f"milestone_owner_ambiguous:{owner}")
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return resolved
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async def _replace_project_milestones(
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db: AsyncSession,
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*,
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study_id: uuid.UUID,
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setup_data: StudySetupConfigData,
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owner_lookup: dict[str, uuid.UUID],
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result: SetupProjectionResult,
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) -> None:
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await db.execute(
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delete(Milestone).where(
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Milestone.study_id == study_id,
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Milestone.type == PROJECT_MILESTONE_TYPE,
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)
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)
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for row in setup_data.projectMilestones:
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start_text = (row.startDate or row.planDate or "").strip()
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if not any([(row.name or "").strip(), (row.owner or "").strip(), (row.remark or "").strip(), start_text]):
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continue
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name = (row.name or "").strip()
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if not name:
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result.warnings.append(f"project_milestone_name_empty:{row.id}")
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continue
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planned_date = _parse_date(start_text)
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if start_text and not planned_date:
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result.warnings.append(f"project_milestone_plan_date_invalid:{row.id}")
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raw_status = (row.status or "").strip()
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mapped_status = MILESTONE_STATUS_MAP.get(raw_status, "NOT_STARTED")
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if raw_status and raw_status not in MILESTONE_STATUS_MAP:
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result.warnings.append(f"project_milestone_status_unknown:{row.id}")
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owner_name = _normalize_text(row.owner)
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owner_id = owner_lookup.get(owner_name, None) if owner_name else None
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db.add(
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Milestone(
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study_id=study_id,
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type=PROJECT_MILESTONE_TYPE,
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name=name,
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planned_date=planned_date,
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status=mapped_status,
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owner_id=owner_id,
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owner_name=owner_name,
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notes=_normalize_text(row.remark),
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)
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)
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async def _replace_site_milestones(
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db: AsyncSession,
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*,
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study_id: uuid.UUID,
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setup_data: StudySetupConfigData,
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owner_lookup: dict[str, uuid.UUID],
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result: SetupProjectionResult,
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) -> None:
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await db.execute(
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delete(Milestone).where(
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Milestone.study_id == study_id,
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Milestone.type == SITE_MILESTONE_TYPE,
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)
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)
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for row in setup_data.siteMilestones:
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if not any(
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[
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(row.milestone or "").strip(),
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(row.owner or "").strip(),
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(row.remark or "").strip(),
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(row.planDate or "").strip(),
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]
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):
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continue
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milestone_name = (row.milestone or "").strip()
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if not milestone_name:
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result.warnings.append(f"site_milestone_name_empty:{row.id}")
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continue
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planned_date = _parse_date(row.planDate)
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if row.planDate and not planned_date:
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result.warnings.append(f"site_milestone_plan_date_invalid:{row.id}")
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mapped_status = _map_milestone_status(row.status)
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if mapped_status is None:
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result.warnings.append(f"site_milestone_status_unknown:{row.id}")
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mapped_status = "NOT_STARTED"
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owner_name = _normalize_text(row.owner)
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owner_id = owner_lookup.get(owner_name, None) if owner_name else None
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db.add(
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Milestone(
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study_id=study_id,
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type=SITE_MILESTONE_TYPE,
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name=milestone_name,
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planned_date=planned_date,
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status=mapped_status,
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owner_id=owner_id,
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owner_name=owner_name,
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notes=_normalize_text(row.remark),
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)
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)
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async def _replace_monitoring_strategies(
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db: AsyncSession,
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*,
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study_id: uuid.UUID,
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setup_data: StudySetupConfigData,
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result: SetupProjectionResult,
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) -> None:
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await db.execute(delete(StudyMonitoringStrategy).where(StudyMonitoringStrategy.study_id == study_id))
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for row in setup_data.monitoringStrategies:
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strategy_type = _normalize_text(row.strategyType)
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detail = _normalize_text(row.detail)
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frequency = _normalize_text(row.frequency)
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if not any([strategy_type, detail, frequency]):
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continue
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if not strategy_type or not detail or not frequency:
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result.warnings.append(f"monitoring_strategy_incomplete:{row.id}")
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continue
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db.add(
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StudyMonitoringStrategy(
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study_id=study_id,
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source_setup_item_id=_normalize_text(row.id),
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strategy_type=strategy_type,
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detail=detail,
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frequency=frequency,
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enabled=bool(row.enabled),
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)
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)
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async def _replace_center_confirms(
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db: AsyncSession,
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*,
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study_id: uuid.UUID,
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setup_data: StudySetupConfigData,
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site_map: dict[str, Site],
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result: SetupProjectionResult,
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) -> None:
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await db.execute(delete(StudyCenterConfirm).where(StudyCenterConfirm.study_id == study_id))
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for row in setup_data.centerConfirm:
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site_id = (row.siteId or "").strip()
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confirmer = _normalize_text(row.confirmer)
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note = _normalize_text(row.note)
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raw_confirm_date = row.confirmDate or ""
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parsed_confirm_date = _parse_date(raw_confirm_date)
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if not any([site_id, confirmer, note, raw_confirm_date]):
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continue
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if not site_id:
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result.skipped_items.append(SetupProjectionSkippedItem(site_id="", reason="center_confirm_site_id_empty"))
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continue
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site = site_map.get(site_id)
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if not site:
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result.skipped_items.append(SetupProjectionSkippedItem(site_id=site_id, reason="center_confirm_site_not_found"))
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continue
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if not site.is_active:
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result.skipped_items.append(SetupProjectionSkippedItem(site_id=site_id, reason="center_confirm_site_inactive"))
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continue
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if raw_confirm_date and not parsed_confirm_date:
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result.skipped_items.append(SetupProjectionSkippedItem(site_id=site_id, reason="center_confirm_date_invalid"))
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result.warnings.append(f"center_confirm_date_invalid:{site_id}")
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continue
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db.add(
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StudyCenterConfirm(
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study_id=study_id,
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site_id=site.id,
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source_setup_item_id=_normalize_text(row.id),
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confirmer=confirmer,
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confirm_status=_normalize_text(row.confirmStatus) or "待确认",
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confirm_date=parsed_confirm_date,
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note=note,
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)
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)
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async def apply_setup_projection_on_publish(
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db: AsyncSession,
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*,
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study_id: uuid.UUID,
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setup_data: StudySetupConfigData,
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operator_id: uuid.UUID | None,
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) -> SetupProjectionResult:
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_ = operator_id
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result = SetupProjectionResult(status="success")
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study_result = await db.execute(select(Study).where(Study.id == study_id))
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study = study_result.scalar_one_or_none()
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if not study:
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return SetupProjectionResult(
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status="failed",
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warnings=["study_not_found"],
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site_skipped_count=0,
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)
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if study.is_locked:
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result.status = "partial_success"
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result.warnings.append("study_locked_skipped")
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result.skipped_items.append(SetupProjectionSkippedItem(site_id=str(study_id), reason="study_locked"))
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result.site_skipped_count = 1
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return result
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plan = setup_data.enrollmentPlan
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new_monthly_goal_note = _normalize_text(plan.monthlyGoalNote)
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new_stage_breakdown = _normalize_text(plan.stageBreakdown)
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study_changed = (
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study.planned_enrollment_count != plan.totalTarget
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or study.enrollment_monthly_goal_note != new_monthly_goal_note
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or study.enrollment_stage_breakdown != new_stage_breakdown
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)
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study.planned_enrollment_count = plan.totalTarget
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study.enrollment_monthly_goal_note = new_monthly_goal_note
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study.enrollment_stage_breakdown = new_stage_breakdown
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result.study_updated = study_changed
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site_result = await db.execute(select(Site).where(Site.study_id == study_id))
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site_map = {str(site.id): site for site in site_result.scalars().all()}
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deduped_plans: dict[str, tuple[int, str, str, str]] = {}
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duplicate_ids: set[str] = set()
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for row in setup_data.siteEnrollmentPlans:
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site_id = (row.siteId or "").strip()
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if not site_id:
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result.skipped_items.append(SetupProjectionSkippedItem(site_id="", reason="site_id_empty"))
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continue
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if site_id in deduped_plans:
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duplicate_ids.add(site_id)
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deduped_plans[site_id] = (
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row.target,
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row.startDate or "",
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row.endDate or "",
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row.note or "",
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)
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for site_id in sorted(duplicate_ids):
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result.warnings.append(f"duplicate_site_enrollment_plan:{site_id}")
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for site_id, (target, raw_start_date, raw_end_date, raw_note) in deduped_plans.items():
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site = site_map.get(site_id)
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if not site:
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result.skipped_items.append(SetupProjectionSkippedItem(site_id=site_id, reason="site_not_found"))
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continue
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if not site.is_active:
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result.skipped_items.append(SetupProjectionSkippedItem(site_id=site_id, reason="site_inactive"))
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continue
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if target < 0:
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result.skipped_items.append(SetupProjectionSkippedItem(site_id=site_id, reason="target_invalid"))
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result.warnings.append(f"target_invalid:{site_id}")
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continue
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start_date = _parse_date(raw_start_date)
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end_date = _parse_date(raw_end_date)
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if raw_start_date and not start_date:
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result.skipped_items.append(SetupProjectionSkippedItem(site_id=site_id, reason="site_plan_start_date_invalid"))
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result.warnings.append(f"site_plan_start_date_invalid:{site_id}")
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continue
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if raw_end_date and not end_date:
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result.skipped_items.append(SetupProjectionSkippedItem(site_id=site_id, reason="site_plan_end_date_invalid"))
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result.warnings.append(f"site_plan_end_date_invalid:{site_id}")
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continue
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site.enrollment_target = target
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site.enrollment_plan_start_date = start_date
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site.enrollment_plan_end_date = end_date
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site.enrollment_plan_note = _normalize_text(raw_note)
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result.site_updated_count += 1
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owner_lookup = await _build_owner_lookup(db, setup_data=setup_data, result=result)
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await _replace_project_milestones(
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db,
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study_id=study_id,
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setup_data=setup_data,
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owner_lookup=owner_lookup,
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result=result,
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)
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await _replace_site_milestones(
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db,
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study_id=study_id,
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setup_data=setup_data,
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owner_lookup=owner_lookup,
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result=result,
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)
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await _replace_monitoring_strategies(db, study_id=study_id, setup_data=setup_data, result=result)
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await _replace_center_confirms(db, study_id=study_id, setup_data=setup_data, site_map=site_map, result=result)
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result.site_skipped_count = len(result.skipped_items)
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if result.site_skipped_count > 0 and result.status != "failed":
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result.status = "partial_success"
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return result
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