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药品流向管理内容优化-初步

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Cheng Zhou
2026-01-13 19:42:28 +08:00
parent 1db36f40b0
commit ef1e67218c
21 changed files with 344 additions and 480 deletions
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backend/alembic/env.py
-71
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from __future__ import annotations
import asyncio
import os
import sys
from logging.config import fileConfig
from alembic import context
from sqlalchemy import pool
from sqlalchemy.ext.asyncio import async_engine_from_config
sys.path.append(os.path.abspath(os.path.join(os.path.dirname(__file__), "..")))
from app.core.config import settings
from app.db.base import Base
config = context.config
if config.config_file_name is not None:
fileConfig(config.config_file_name)
target_metadata = Base.metadata
def _get_database_url() -> str:
url = os.getenv("DATABASE_URL", settings.DATABASE_URL)
if url and url.startswith("postgresql+asyncpg://"):
return url
return url
def run_migrations_offline() -> None:
url = _get_database_url()
context.configure(
url=url,
target_metadata=target_metadata,
literal_binds=True,
dialect_opts={"paramstyle": "named"},
)
with context.begin_transaction():
context.run_migrations()
def do_run_migrations(connection) -> None:
context.configure(connection=connection, target_metadata=target_metadata)
with context.begin_transaction():
context.run_migrations()
async def run_migrations_online() -> None:
configuration = config.get_section(config.config_ini_section, {})
configuration["sqlalchemy.url"] = _get_database_url()
connectable = async_engine_from_config(
configuration,
prefix="sqlalchemy.",
poolclass=pool.NullPool,
)
async with connectable.connect() as connection:
await connection.run_sync(do_run_migrations)
await connectable.dispose()
if context.is_offline_mode():
run_migrations_offline()
else:
asyncio.run(run_migrations_online())
backend/alembic/versions/20240501_000001_create_users_table.py
-50
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"""create users table with review status"""
from __future__ import annotations
from alembic import op
import sqlalchemy as sa
from sqlalchemy.dialects import postgresql
# revision identifiers, used by Alembic.
revision = "20240501_000001"
down_revision = None
branch_labels = None
depends_on = None
user_role_enum = sa.Enum("ADMIN", "PM", "CRA", "PV", "IMP", name="user_role")
user_status_enum = sa.Enum("PENDING", "ACTIVE", "REJECTED", "DISABLED", name="user_status")
def upgrade() -> None:
bind = op.get_bind()
user_role_enum.create(bind, checkfirst=True)
user_status_enum.create(bind, checkfirst=True)
op.create_table(
"users",
sa.Column("id", postgresql.UUID(as_uuid=True), primary_key=True, nullable=False),
sa.Column("email", sa.String(length=255), nullable=False),
sa.Column("password_hash", sa.String(length=255), nullable=False),
sa.Column("full_name", sa.String(length=255), nullable=False),
sa.Column("role", user_role_enum, nullable=False),
sa.Column("department", sa.String(length=255), nullable=False),
sa.Column("status", user_status_enum, nullable=False, server_default="PENDING"),
sa.Column("created_at", sa.DateTime(timezone=True), nullable=False, server_default=sa.text("now()")),
sa.Column(
"updated_at",
sa.DateTime(timezone=True),
nullable=False,
server_default=sa.text("now()"),
),
sa.Column("approved_by", postgresql.UUID(as_uuid=True), sa.ForeignKey("users.id"), nullable=True),
sa.Column("approved_at", sa.DateTime(timezone=True), nullable=True),
)
op.create_index("ix_users_email", "users", ["email"], unique=True)
def downgrade() -> None:
op.drop_index("ix_users_email", table_name="users")
op.drop_table("users")
bind = op.get_bind()
user_role_enum.drop(bind, checkfirst=True)
user_status_enum.drop(bind, checkfirst=True)
backend/alembic/versions/20240501_000002_add_avatar_to_users.py
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"""add avatar_url to users"""
from __future__ import annotations
from alembic import op
import sqlalchemy as sa
# revision identifiers, used by Alembic.
revision = "20240501_000002"
down_revision = "20240501_000001"
branch_labels = None
depends_on = None
def upgrade() -> None:
op.add_column("users", sa.Column("avatar_url", sa.String(length=500), nullable=True))
def downgrade() -> None:
op.drop_column("users", "avatar_url")
backend/alembic/versions/20240501_000003_drop_visit_name_from_visits.py
-22
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"""drop visit_name from visits"""
from __future__ import annotations
from alembic import op
import sqlalchemy as sa
# revision identifiers, used by Alembic.
revision = "20240501_000003"
down_revision = "20240501_000002"
branch_labels = None
depends_on = None
def upgrade() -> None:
op.drop_column("visits", "visit_name")
def downgrade() -> None:
op.add_column(
"visits",
sa.Column("visit_name", sa.String(length=200), nullable=False, server_default=""),
)
backend/alembic/versions/20240501_000004_add_visit_template_to_studies.py
-25
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"""add visit template fields to studies"""
from __future__ import annotations
from alembic import op
import sqlalchemy as sa
# revision identifiers, used by Alembic.
revision = "20240501_000004"
down_revision = "20240501_000003"
branch_labels = None
depends_on = None
def upgrade() -> None:
op.add_column("studies", sa.Column("visit_interval_days", sa.Integer(), nullable=True))
op.add_column("studies", sa.Column("visit_total", sa.Integer(), nullable=True))
op.add_column("studies", sa.Column("visit_window_start_offset", sa.Integer(), nullable=True))
op.add_column("studies", sa.Column("visit_window_end_offset", sa.Integer(), nullable=True))
def downgrade() -> None:
op.drop_column("studies", "visit_window_end_offset")
op.drop_column("studies", "visit_window_start_offset")
op.drop_column("studies", "visit_total")
op.drop_column("studies", "visit_interval_days")
backend/alembic/versions/20240501_000005_add_consent_date_to_subjects.py
-19
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"""add consent_date to subjects"""
from __future__ import annotations
from alembic import op
import sqlalchemy as sa
# revision identifiers, used by Alembic.
revision = "20240501_000005"
down_revision = "20240501_000004"
branch_labels = None
depends_on = None
def upgrade() -> None:
op.add_column("subjects", sa.Column("consent_date", sa.Date(), nullable=True))
def downgrade() -> None:
op.drop_column("subjects", "consent_date")
backend/alembic/versions/20240501_000006_create_fee_tables.py
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"""create fee tables
Revision ID: 20240501_000006
Revises: 20240501_000005
Create Date: 2025-02-14 00:00:00
"""
from alembic import op
import sqlalchemy as sa
revision = "20240501_000006"
down_revision = "20240501_000005"
branch_labels = None
depends_on = None
def upgrade() -> None:
op.create_table(
"contract_fees",
sa.Column("id", sa.dialects.postgresql.UUID(as_uuid=True), primary_key=True),
sa.Column("project_id", sa.dialects.postgresql.UUID(as_uuid=True), nullable=False),
sa.Column("center_id", sa.dialects.postgresql.UUID(as_uuid=True), nullable=False),
sa.Column("contract_amount", sa.Numeric(12, 2), nullable=False),
sa.Column("contract_cases", sa.Integer(), nullable=False),
sa.Column("actual_cases", sa.Integer(), nullable=True),
sa.Column("settlement_amount", sa.Numeric(12, 2), nullable=True),
sa.Column("final_payment_amount", sa.Numeric(12, 2), nullable=True),
sa.Column("created_at", sa.DateTime(timezone=True), server_default=sa.text("now()"), nullable=False),
sa.Column("updated_at", sa.DateTime(timezone=True), server_default=sa.text("now()"), nullable=False),
sa.ForeignKeyConstraint(["project_id"], ["studies.id"], ondelete="RESTRICT"),
sa.ForeignKeyConstraint(["center_id"], ["sites.id"], ondelete="RESTRICT"),
sa.UniqueConstraint("project_id", "center_id", name="uq_contract_fees_project_center"),
)
op.create_index("ix_contract_fees_project_id", "contract_fees", ["project_id"])
op.create_index("ix_contract_fees_center_id", "contract_fees", ["center_id"])
op.create_table(
"contract_fee_payments",
sa.Column("id", sa.dialects.postgresql.UUID(as_uuid=True), primary_key=True),
sa.Column("contract_fee_id", sa.dialects.postgresql.UUID(as_uuid=True), nullable=False),
sa.Column("seq", sa.Integer(), nullable=False),
sa.Column("amount", sa.Numeric(12, 2), nullable=False),
sa.Column("paid_date", sa.Date(), nullable=True),
sa.Column("verified_date", sa.Date(), nullable=True),
sa.Column("is_paid", sa.Boolean(), server_default=sa.text("false"), nullable=False),
sa.Column("is_verified", sa.Boolean(), server_default=sa.text("false"), nullable=False),
sa.Column("remark", sa.Text(), nullable=True),
sa.Column("created_at", sa.DateTime(timezone=True), server_default=sa.text("now()"), nullable=False),
sa.Column("updated_at", sa.DateTime(timezone=True), server_default=sa.text("now()"), nullable=False),
sa.ForeignKeyConstraint(["contract_fee_id"], ["contract_fees.id"], ondelete="CASCADE"),
)
op.create_index("ix_contract_fee_payments_contract_fee_id", "contract_fee_payments", ["contract_fee_id"])
op.create_table(
"special_expenses",
sa.Column("id", sa.dialects.postgresql.UUID(as_uuid=True), primary_key=True),
sa.Column("project_id", sa.dialects.postgresql.UUID(as_uuid=True), nullable=False),
sa.Column("center_id", sa.dialects.postgresql.UUID(as_uuid=True), nullable=True),
sa.Column("category", sa.String(50), nullable=False),
sa.Column("amount", sa.Numeric(12, 2), nullable=False),
sa.Column("happen_date", sa.Date(), nullable=True),
sa.Column("description", sa.Text(), nullable=True),
sa.Column("is_paid", sa.Boolean(), server_default=sa.text("false"), nullable=False),
sa.Column("paid_date", sa.Date(), nullable=True),
sa.Column("is_verified", sa.Boolean(), server_default=sa.text("false"), nullable=False),
sa.Column("verified_date", sa.Date(), nullable=True),
sa.Column("created_by", sa.dialects.postgresql.UUID(as_uuid=True), nullable=True),
sa.Column("created_at", sa.DateTime(timezone=True), server_default=sa.text("now()"), nullable=False),
sa.Column("updated_at", sa.DateTime(timezone=True), server_default=sa.text("now()"), nullable=False),
sa.ForeignKeyConstraint(["project_id"], ["studies.id"], ondelete="RESTRICT"),
sa.ForeignKeyConstraint(["center_id"], ["sites.id"], ondelete="RESTRICT"),
sa.ForeignKeyConstraint(["created_by"], ["users.id"], ondelete="RESTRICT"),
)
op.create_index("ix_special_expenses_project_id", "special_expenses", ["project_id"])
op.create_index("ix_special_expenses_center_id", "special_expenses", ["center_id"])
op.create_table(
"fee_attachments",
sa.Column("id", sa.dialects.postgresql.UUID(as_uuid=True), primary_key=True),
sa.Column("entity_type", sa.String(50), nullable=False),
sa.Column("entity_id", sa.dialects.postgresql.UUID(as_uuid=True), nullable=False),
sa.Column("file_type", sa.String(30), nullable=False),
sa.Column("filename", sa.String(255), nullable=False),
sa.Column("mime_type", sa.String(100), nullable=True),
sa.Column("size", sa.Integer(), nullable=False),
sa.Column("storage_key", sa.String(500), nullable=True),
sa.Column("url", sa.Text(), nullable=True),
sa.Column("uploaded_by", sa.dialects.postgresql.UUID(as_uuid=True), nullable=False),
sa.Column("uploaded_at", sa.DateTime(timezone=True), server_default=sa.text("now()"), nullable=False),
sa.Column("is_deleted", sa.Boolean(), server_default=sa.text("false"), nullable=False),
sa.ForeignKeyConstraint(["uploaded_by"], ["users.id"], ondelete="RESTRICT"),
)
def downgrade() -> None:
op.drop_table("fee_attachments")
op.drop_index("ix_special_expenses_center_id", table_name="special_expenses")
op.drop_index("ix_special_expenses_project_id", table_name="special_expenses")
op.drop_table("special_expenses")
op.drop_index("ix_contract_fee_payments_contract_fee_id", table_name="contract_fee_payments")
op.drop_table("contract_fee_payments")
op.drop_index("ix_contract_fees_center_id", table_name="contract_fees")
op.drop_index("ix_contract_fees_project_id", table_name="contract_fees")
op.drop_table("contract_fees")