Step 6:受试者(Subject)+ 访视(Visit)+ 随访进度

This commit is contained in:
Cheng Zhou
2025-12-16 17:43:11 +08:00
parent a9e15faedc
commit c77b20f932
69 changed files with 468 additions and 1 deletions
+3 -1
View File
@@ -1,6 +1,6 @@
from fastapi import APIRouter
from app.api.v1 import auth, users, studies, sites, members, comments, attachments, audit_logs, milestones, tasks, dashboard
from app.api.v1 import auth, users, studies, sites, members, comments, attachments, audit_logs, milestones, tasks, dashboard, subjects, visits
api_router = APIRouter()
api_router.include_router(auth.router, prefix="/auth", tags=["auth"])
@@ -14,3 +14,5 @@ api_router.include_router(audit_logs.router, prefix="/studies/{study_id}/audit-l
api_router.include_router(milestones.router, prefix="/studies/{study_id}/milestones", tags=["milestones"])
api_router.include_router(tasks.router, prefix="/studies/{study_id}/tasks", tags=["tasks"])
api_router.include_router(dashboard.router, prefix="/studies/{study_id}/dashboard", tags=["dashboard"])
api_router.include_router(subjects.router, prefix="/studies/{study_id}/subjects", tags=["subjects"])
api_router.include_router(visits.router, prefix="/studies/{study_id}/subjects/{subject_id}/visits", tags=["visits"])
+102
View File
@@ -0,0 +1,102 @@
import uuid
from fastapi import APIRouter, Depends, HTTPException, status
from sqlalchemy.ext.asyncio import AsyncSession
from app.core.deps import get_current_user, get_db_session, require_study_member, require_study_roles
from app.crud import audit as audit_crud
from app.crud import subject as subject_crud
from app.crud import study as study_crud
from app.schemas.subject import SubjectCreate, SubjectRead, SubjectUpdate
router = APIRouter()
async def _ensure_study_exists(db: AsyncSession, study_id: uuid.UUID):
study = await study_crud.get(db, study_id)
if not study:
raise HTTPException(status_code=status.HTTP_404_NOT_FOUND, detail="Study not found")
return study
@router.post(
"/",
response_model=SubjectRead,
status_code=status.HTTP_201_CREATED,
dependencies=[Depends(require_study_roles(["PM", "CRA"]))],
)
async def create_subject(
study_id: uuid.UUID,
subject_in: SubjectCreate,
db: AsyncSession = Depends(get_db_session),
current_user=Depends(get_current_user),
) -> SubjectRead:
await _ensure_study_exists(db, study_id)
try:
subject = await subject_crud.create_subject(db, study_id, subject_in)
except ValueError as exc:
raise HTTPException(status_code=status.HTTP_400_BAD_REQUEST, detail=str(exc)) from exc
await audit_crud.log_action(
db,
study_id=study_id,
entity_type="subject",
entity_id=subject.id,
action="CREATE_SUBJECT",
detail=f"Subject {subject.subject_no} created",
operator_id=current_user.id,
operator_role=current_user.role,
)
return subject
@router.get(
"/",
response_model=list[SubjectRead],
dependencies=[Depends(require_study_member())],
)
async def list_subjects(
study_id: uuid.UUID,
site_id: uuid.UUID | None = None,
status_filter: str | None = None,
db: AsyncSession = Depends(get_db_session),
) -> list[SubjectRead]:
await _ensure_study_exists(db, study_id)
subjects = await subject_crud.list_subjects(db, study_id, site_id=site_id, status=status_filter)
return list(subjects)
@router.patch(
"/{subject_id}",
response_model=SubjectRead,
dependencies=[Depends(require_study_roles(["PM", "CRA"]))],
)
async def update_subject(
study_id: uuid.UUID,
subject_id: uuid.UUID,
subject_in: SubjectUpdate,
db: AsyncSession = Depends(get_db_session),
current_user=Depends(get_current_user),
) -> SubjectRead:
await _ensure_study_exists(db, study_id)
subject = await subject_crud.get_subject(db, subject_id)
if not subject or subject.study_id != study_id:
raise HTTPException(status_code=status.HTTP_404_NOT_FOUND, detail="Subject not found")
old_status = subject.status
updated = await subject_crud.update_subject(db, subject, subject_in)
# auto-generate visits when enrolled
if subject_in.status and subject_in.status == "ENROLLED" and (subject_in.enrollment_date or updated.enrollment_date):
await subject_crud.generate_default_visits(db, updated)
detail = None
if subject_in.status and subject_in.status != old_status:
detail = f"subject {updated.subject_no} status {old_status} -> {subject_in.status}"
await audit_crud.log_action(
db,
study_id=study_id,
entity_type="subject",
entity_id=subject_id,
action="SUBJECT_STATUS_CHANGE" if detail else "UPDATE_SUBJECT",
detail=detail or "Subject updated",
operator_id=current_user.id,
operator_role=current_user.role,
)
return updated
+70
View File
@@ -0,0 +1,70 @@
import uuid
from fastapi import APIRouter, Depends, HTTPException, status
from sqlalchemy.ext.asyncio import AsyncSession
from app.core.deps import get_current_user, get_db_session, require_study_member, require_study_roles
from app.crud import audit as audit_crud
from app.crud import subject as subject_crud
from app.crud import visit as visit_crud
from app.schemas.visit import VisitRead, VisitUpdate
router = APIRouter()
async def _ensure_subject(db: AsyncSession, study_id: uuid.UUID, subject_id: uuid.UUID):
subject = await subject_crud.get_subject(db, subject_id)
if not subject or subject.study_id != study_id:
raise HTTPException(status_code=status.HTTP_404_NOT_FOUND, detail="Subject not found")
return subject
@router.get(
"/",
response_model=list[VisitRead],
dependencies=[Depends(require_study_member())],
)
async def list_visits(
study_id: uuid.UUID,
subject_id: uuid.UUID,
db: AsyncSession = Depends(get_db_session),
) -> list[VisitRead]:
await _ensure_subject(db, study_id, subject_id)
visits = await visit_crud.list_visits(db, subject_id)
return list(visits)
@router.patch(
"/{visit_id}",
response_model=VisitRead,
dependencies=[Depends(require_study_roles(["PM", "CRA"]))],
)
async def update_visit(
study_id: uuid.UUID,
subject_id: uuid.UUID,
visit_id: uuid.UUID,
visit_in: VisitUpdate,
db: AsyncSession = Depends(get_db_session),
current_user=Depends(get_current_user),
) -> VisitRead:
await _ensure_subject(db, study_id, subject_id)
visit = await visit_crud.get_visit(db, visit_id)
if not visit or visit.subject_id != subject_id or visit.study_id != study_id:
raise HTTPException(status_code=status.HTTP_404_NOT_FOUND, detail="Visit not found")
if visit_in.status == "DONE" and not visit_in.actual_date:
raise HTTPException(status_code=status.HTTP_400_BAD_REQUEST, detail="actual_date required when DONE")
updated = await visit_crud.update_visit(db, visit, visit_in)
detail = None
if visit_in.status:
detail = f"visit {visit.visit_code} {visit.status} -> {visit_in.status}"
await audit_crud.log_action(
db,
study_id=study_id,
entity_type="visit",
entity_id=visit_id,
action="VISIT_STATUS_CHANGE" if detail else "UPDATE_VISIT",
detail=detail or "Visit updated",
operator_id=current_user.id,
operator_role=current_user.role,
)
return updated